LIBOIS, Roland, FONS, Roger, MATHIAS,  Maria da Luz, SANTOS-REIS, Margarida, PETRUCCI-FONSECA, Francisco, RAMALHINHO, Maria da Graça & OOM, Maria do Mar (1997) - Notes on the flea fauna (Insecta, Siphonaptera) of the terrestrial Azorean Mammals. Arquivos do Museu Bocage, Nova Série, III (1): 1-11.

ARRUDA, Luís M. (1997) - Checklist of the marine Fishes of the Azores. Arquivos do Museu Bocage, Nova Série, III (2): 13-164.

CUNHA, M.R., SORBE, J.C. & BERNARDES, C. (1997) - On the structure of the coastal suprabenthic communities from the continental shelf off Aveiro (NW Portugal). Arquivos do Museu Bocage, Nova Série, III (3): 165-188.

CONCHA, J.I. Ruiz de la & BLASCO, M. (1998) - Morphology of the columellar apparatus of Reptiles. Arquivos do Museu Bocage, Nova Série, III (4): 189-204.

ALMEIDA, Armando J. (1998) - Gobius xanthocephalus Heymer & Zander, 1992 in Portugueses waters (Pisces: Gobiidae). Arquivos do Museu Bocage, Nova Série, III (5): 205-212.

MARQUES, Afonso M. (1998) - On the presence of Centrodraco acanthopoma (Regan, 1904) (Pisces, Draconettidae) in Portuguese waters. Arquivos do Museu Bocage, Nova Série, III (6): 213-220.

COSTA, F. Fidalgo & FONSECA, L. Cancela da (1998) - First data on Nereis (Hediste) diversicolor O.F. Muller, 1776 (Annelida, Polychaeta) in the estuary of the Aljezur river (SW coast of Portugal). Arquivos do Museu Bocage, Nova Série, III (7): 221-238.

AZEITEIRO, U.M., MARQUES, J.C. & RÉ, Pedro (1999) - Zooplankton annual cycle in the Mondego River estuari (Portugal). Arquivos do Museu Bocage, Nova Série, III (8): 239-264.

ALMEIDA, Armando J., SALDANHA, Luís & ANDRÉ, E. (1999) - Fishes of the seagrass beds of the Inhaca Island (Mozambique) - Community structure and dynamics. Arquivos do Museu Bocage, Nova Série, III (9): 265-286.

GIL, João & SARDÁ, Rafael (1999) - New records of Annelida Polychaeta for the Portuguese fauna (with comments on some already known species). Arquivos do Museu Bocage, Nova Série, III (10): 287-336.

HAZEVOET, Cornelis J. (1999) - Whales and Dolphins (Mammalia, Cetacea) in the collections of the Museu Bocage, past and present. Arquivos do Museu Bocage, Nova Série, III (11): 337-356.

AZEITEIRO, U.M., MARQUES, J.C. & RÉ, Pedro (2000) - Zooplankton assemblages in a shallow, seasonally tidal estuary in temperate Atlantic Ocean (Western Portugal: Mondego Estuary). Arquivos do Museu Bocage, Nova Série, III (12): 357-376.

CANÁRIO, Filipe & VICENTE, Luis (2000) - The Azure-winged magpie's nest: placement, structure, composition and size (Cyanopica cyanus; Aves - Corvidae). Arquivos do Museu Bocage, nova série, Vol. III (13): 377-388.

GORDO, leonel Serrano, SOARES, Eduardo & FIGUEIREDO, Ivone (2001) - Batch fecundity and spawning fraction of sardine off the Portuguese coast in 1997. Arquivos do Museu Bocage, nova série, Vol. III (14): 389-400..

QUARTAU, J.A., SIMÕES, P.C., REBELO, M.T. & ANDRÉ, G. (1998) - On two species of the genus Tibicina Amyot, 1847 (Hemiptera, Cicadoidea) in Portugal, with one new record. Arquivos do Museu Bocage, Nova Série, III (15): 401-412.

ANTUNES, P., E.G. Crespo & L. Vicente (2001) - On the occurrence of Lacerta monticola Boulenger, 1905 in Montesinho Natural Park (North of Portugal). Arquivos do Museu Bocage, Nova Série, III (16): 413-420.

VIEIRA, L., P. Ré, F.M.R. Morgado, M. Pereira, J.C. Marques & U.M.M. Azeiteiro (2002) - Distribution and production of Acartia bifiliosa var. inermis from a temperate estuary (Mondego Estuary, Portugal). Arquivos do Museu Bocage, Nova Série, III (17): 421-440.

ANTUNES, P., L. Vicente & E.G. Crespo (2003) - Portuguese Lacertids in the collections of the Museu Bocage. Arquivos do Museu Bocage, III (18): 441-502.

HAZEVOET, Cornelis J. (2003) - Fifth report on Birds from the Cape Verde Islands, including records of 15 taxa new to the Archipelago. Arquivos do Museu Bocage, III (19): 503-528.

RIBEIRO, Eugénia (2003) - Twenty five new records on Portuguese Fungus Gnats (Diptera: Sciaroidea). Arquivos do Museu Bocage, III (20): 529-550.

MARQUES, Paulo (2003) - The effect of brood size and nestling condition in parental care of Passer hispaniolensis (Aves-Passeridae). Arquivos do Museu Bocage, III (21): 551-562.

QUARTAU, J.A. & P.C. SIMÕES (2004) - First description of the calling song produced by Euryphara contentei Boulard, 1892 (Insecta: Hemiptera, Cicadoidea) in Portugal. Arquivos do Museu Bocage, III (22): 563-572.

RIBEIRO, Eugénia (2004) - New data on some fungus gnats (Diptera, Sciaroidea) in Portugal . Arquivos do Museu Bocage, III (23): 573-590.